Package: csmGmm 0.4.0

csmGmm: Conditionally Symmetric Multidimensional Gaussian Mixture Model

Implements the conditionally symmetric multidimensional Gaussian mixture model (csmGmm) for large-scale testing of composite null hypotheses in genetic association applications such as mediation analysis, pleiotropy analysis, and replication analysis. In such analyses, we typically have J sets of K test statistics where K is a small number (e.g. 2 or 3) and J is large (e.g. 1 million). For each one of the J sets, we want to know if we can reject all K individual nulls. Please see the vignette for a quickstart guide. The paper describing these methods is "Testing a Large Number of Composite Null Hypotheses Using Conditionally Symmetric Multidimensional Gaussian Mixtures in Genome-Wide Studies" by Sun R, McCaw Z, & Lin X (Journal of the American Statistical Association 2025, <doi:10.1080/01621459.2024.2422124>).

Authors:Ryan Sun [aut, cre]

csmGmm_0.4.0.tar.gz
csmGmm_0.4.0.zip(r-4.7)csmGmm_0.4.0.zip(r-4.6)csmGmm_0.4.0.zip(r-4.5)
csmGmm_0.4.0.tgz(r-4.6-any)csmGmm_0.4.0.tgz(r-4.5-any)
csmGmm_0.4.0.tar.gz(r-4.7-any)csmGmm_0.4.0.tar.gz(r-4.6-any)
csmGmm_0.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
csmGmm/json (API)

# Install 'csmGmm' in R:
install.packages('csmGmm', repos = c('https://ryansunwork.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.83 score 135 scripts 521 downloads 14 exports 16 dependencies

Last updated from:35f116a0ea. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK142
source / vignettesOK234
linux-release-x86_64OK142
macos-release-arm64OK104
macos-oldrel-arm64OK135
windows-develOK92
windows-releaseOK106
windows-oldrelOK96
wasm-releaseOK100

Exports:calc_dens_corcalc_dens_ind_2dcalc_dens_ind_3dcalc_dens_ind_multiplecheck_incongruousfind_2dfind_3dfind_max_meanssymm_fit_cor_EMsymm_fit_cor_EM_fullliksymm_fit_cor_EM_noAssumptionsymm_fit_cor_EM_rhosymm_fit_ind_EMsymm_fit_ind_EM_noAssumption

Dependencies:clidplyrgenericsgluelifecyclemagrittrmvtnormpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr

csmGmm Tutorial

Rendered fromcsmGmm_tutorial.Rmdusingknitr::rmarkdownon May 15 2026.

Last update: 2025-09-16
Started: 2024-12-03