Package: csmGmm 0.5.0
csmGmm: Conditionally Symmetric Multidimensional Gaussian Mixture Model
Implements the conditionally symmetric multidimensional Gaussian mixture model (csmGmm) for large-scale testing of composite null hypotheses in genetic association applications such as mediation analysis, pleiotropy analysis, and replication analysis. In such analyses, we typically have J sets of K test statistics where K is a small number (e.g. 2 or 3) and J is large (e.g. 1 million). For each one of the J sets, we want to know if we can reject all K individual nulls. Please see the vignette for a quickstart guide. The paper describing these methods is "Testing a Large Number of Composite Null Hypotheses Using Conditionally Symmetric Multidimensional Gaussian Mixtures in Genome-Wide Studies" by Sun R, McCaw Z, & Lin X (Journal of the American Statistical Association 2025, <doi:10.1080/01621459.2024.2422124>).
Authors:
csmGmm_0.5.0.tar.gz
csmGmm_0.5.0.zip(r-4.7-any)csmGmm_0.5.0.zip(r-4.6-any)csmGmm_0.5.0.zip(r-4.5-any)
csmGmm_0.5.0.tgz(r-4.6-any)csmGmm_0.5.0.tgz(r-4.5-any)
csmGmm_0.5.0.tar.gz(r-4.7-any)csmGmm_0.5.0.tar.gz(r-4.6-any)
csmGmm_0.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
csmGmm/json (API)
| # Install 'csmGmm' in R: |
| install.packages('csmGmm', repos = c('https://ryansunwork.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:fd3fd9167e. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 153 | ||
| source / vignettes | OK | 238 | ||
| linux-release-x86_64 | OK | 155 | ||
| macos-release-arm64 | OK | 163 | ||
| macos-oldrel-arm64 | OK | 111 | ||
| windows-devel | OK | 111 | ||
| windows-release | OK | 103 | ||
| windows-oldrel | OK | 102 | ||
| wasm-release | OK | 127 |
Exports:calc_dens_corcalc_dens_ind_2dcalc_dens_ind_3dcalc_dens_ind_multiplecheck_incongruouscreate_plotsfind_2dfind_3dfind_4dfind_max_meansgenerate_init_listsprepare_csmgmm_dataprocess_lfdr_resultsread_gwas_oneread_gwas_setsymm_fit_cor_EMsymm_fit_cor_EM_fullliksymm_fit_cor_EM_noAssumptionsymm_fit_cor_EM_rhosymm_fit_ind_EMsymm_fit_ind_EM_noAssumption
Dependencies:clicpp11curldata.tabledplyrfarvergenericsggplot2gluegtableisobandlabelinglifecyclemagrittrmvtnormpillarpkgconfigR6RColorBrewerrlangS7scalestibbletidyselectutf8vctrsviridisLitewithr
