Package: reconstructKM 0.3.0

reconstructKM: Reconstruct Individual-Level Data from Published KM Plots

Functions for reconstructing individual-level data (time, status, arm) from Kaplan-MEIER curves published in academic journals (e.g. NEJM, JCO, JAMA). The individual-level data can be used for re-analysis, meta-analysis, methodology development, etc. This package was used to generate the data for commentary such as Sun, Rich, & Wei (2018) <doi:10.1056/NEJMc1808567>. Please see the vignette for a quickstart guide.

Authors:Ryan Sun [aut, cre]

reconstructKM_0.3.0.tar.gz
reconstructKM_0.3.0.zip(r-4.5)reconstructKM_0.3.0.zip(r-4.4)reconstructKM_0.3.0.zip(r-4.3)
reconstructKM_0.3.0.tgz(r-4.4-any)reconstructKM_0.3.0.tgz(r-4.3-any)
reconstructKM_0.3.0.tar.gz(r-4.5-noble)reconstructKM_0.3.0.tar.gz(r-4.4-noble)
reconstructKM_0.3.0.tgz(r-4.4-emscripten)reconstructKM_0.3.0.tgz(r-4.3-emscripten)
reconstructKM.pdf |reconstructKM.html
reconstructKM/json (API)

# Install 'reconstructKM' in R:
install.packages('reconstructKM', repos = c('https://ryansunwork.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • pbo_NAR - Pembrolizumab example OS NAR table - placebo arm
  • pbo_clicks - Pembrolizumab example OS KM reconstruction clicks - placebo arm
  • pembro_NAR - Pembrolizumab example OS NAR table - pembrolizumab arm
  • pembro_clicks - Pembrolizumab example OS KM reconstruction clicks - pembrolizumab arm

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 2 scripts 140 downloads 2 mentions 10 exports 91 dependencies

Last updated 4 years agofrom:2271079f9c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winOKNov 08 2024
R-4.5-linuxOKNov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:add_clicksCIC_reconstructformat_raw_tabsintegrate_survdatKM_reconstructnonparam_rmstprint_cox_outputsremove_clicksweibull_rmstweimle1

Dependencies:abindbackportsbootbroomcarcarDataclicolorspacecommonmarkcorrplotcowplotcpp11curldata.tableDerivdoBydplyrevaluateexactRankTestsfansifarverFormulagenericsggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehighrisobandjpegkm.ciKMsurvknitrlabelinglatticelifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmaxstatmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolynompurrrquantregR6RColorBrewerRcppRcppEigenrlangrstatixscalesSparseMstringistringrsurvivalsurvminersurvMisctibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtableyamlzoo

reconstructKM Tutoral

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2020-11-25
Started: 2020-11-25